PATRIC Workshop
@ Argonne National Laboratory
The PATRIC/RAST teams will be offering a tutorial on 2017-November 14-16, at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days, with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. Included will be genome assembly, annotation, comparative analysis, and variation, as well as metabolic model construction, RNA-Seq analysis, Tn-seq analysis, and phylogenetic tree construction. Registration information is available HERE. The workshop will be limited to 35 people on a first-come, first-served basis.
New Services and Data
Recent Release
Phylogenetic Tree Builder constructs custom phylogenetic trees using conserved protein sequences.Tn-Seq Analysis aligns reads and measures essentiality of Tn-seq data using the TRANSIT software.
Similar Genome Finder finds the closest related genomes to selected genome or FASTA file using MInHash.
Compare Region Viewer displays flanking regions of user selected genomes for a particular gene.
AMR Phenotype Data provides AMR phenotype and measurement method for list of genomes.
Antibiotic Database provides antibiotic name, description, chemical structure, mechanism, and pharmacology.
PATRIC Crosses 100,000 Genomes Mark
In the May 2017 release, PATRIC has added over 7,700 new genomes, bringing the total number of public genomes in PATRIC to approximately 105,000. This is a notable milestone for the project considering that the database contained only 400 bacterial genomes at the end of 2009 when PATRIC launched the all bacteria Bioinformatics Resource Center. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria in the PATRIC website.
Antibiotic Resistance Data
for Infectious Disease Research
Antibiotic Resistance refers to the ability of bacteria to develop resistance to antibiotics through gene mutation or acquisition of antibiotic resistance genes. PATRIC collects known antibiotic resistance genes from reputed external databases and publications and maps them to homologous genes using BLASTP, so you can easily find and analyze them with PATRIC tools. We also incorporate antibiotic susceptibility testing results as additional genome metadata.
PATRIC WorkshopARGONNE, IL |
New Services & DataIn PATRIC |
100,000 GenomesIn PATRIC |
INVESTIGATINGANTIBIOTIC RESISTANCE |
Recent News9/30/2017
Data Updates: New Genomes and Metadata In this release, PATRIC has added >7,500 new genomes and associated metadata, bringing the total number of genomes in PATRIC to over 116,000. The full list of available microbial and host genomes can be accessed here. This release features 1,668 Klebsiella pneumoniae genomes, which are clinical isolates from Houston […]
9/8/2017
The PATRIC/RAST teams will be offering a tutorial workshop on 2017-November 14-16, at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days, with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members. The tutorial will show […]
7/31/2017
PATRIC July 2017 Data and Website Release: Data Updates: New Genomes In this release, PATRIC has added 3902 new genomes and associated metadata, bringing the total number of genomes in PATRIC to over 108,000. The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria, and from the Genomes Data Landing […]
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Top 10 Genera |