Metagenomic Binning Service accepts either reads or contigs, and attempts to "bin" the data into a set of genomes. This service can be used to reconstruct bacterial and archael genomes from environmental samples
Proteome Comparison Service compares annotated proteins by bi-directional BLASTP analysis.
Phylogenetic Tree Builder generates whole-genome phylogenies from amino acid sequences.
The PATRIC/RAST team will be offering a 1-day tutorial workshop on June 7 at ASM Microbe 2018 in Atlanta, GA. The workshop will provide demonstrations and hands-on exercises using key PATRIC features and functionality.
PATRIC has recently undergone a homepage redesign to better meet the needs of our users. We wanted to streamline our services and make it as easy as possible for users to quickly access areas of PATRIC they need most. Please feel free to check out the new homepage and submit any feedback you may have. It's not 100% complete so expect some changes to still be made.
PATRIC now includes subsystem data for single genome, taxon, and genome group levels. Subsystems are curated sets of biologically related functional roles across a reference set of genomes, comprising units of expert knowledge about a single biological process.
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Recent News4/3/2018
The PATRIC/RAST teams will be offering a tutorial workshop June 7, 2018, at ASM Microbe 2018 in Atlanta, GA. The workshop will run for one day and will cover key functionality of the PATRIC system. 3/30/2018
In this release, PATRIC has new subsystems functionality with precomputed subsystems for all PATRIC genomes as well as protein family updates. It also includes additional genome metadata with AMR panel data and new datasets from NIAID-funded centers. This release also enhancements to the Circular Genome Viewer and a new PATRIC homepage design for evaluation and review. 2/12/2018
PATRIC provides a new Metagenomic Binning Service that accepts either reads or contigs, and attempts to “bin” the data into a set of genomes. It can be used to reconstruct bacterial and archael genomes from environmental samples. The new service will produce reports that estimate the quality of the reconstructed genome for each bin, as well as potentially problematic annotations for each of the derived genomes. On February 28th at 3pm EST we will provide a webinar demonstrates this service. Please email rwattam@vt.edu if you plan to attend so that we will know approximately how many participants to expect. The webinar will be recorded and made available for later access. Note: The recorded webinar is now available here: <https://docs.patricbrc.org//webinar/metagenomic_binning.html> |
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